Bioinformatic Best Practices
Translational Bioinformatics for Immunogenomics
Welcome
Introduction
Human Leukocyte Antigens
1
Functional Divergence
2
HLA Imputation Programs
3
HLA Analysis Programs
Killer Cell Immunoglobulin-like Receptors
4
KIR Allele Imputation Programs
ERAP
5
ERAP Imputation
Bonus
Drug Allergy
6
Immediate Drug Allergy
7
Delayed Drug Allergy
8
Specific Drugs
Bioinformatic Best Practices
9
Reproducible Data Analysis Workflow
10
Project Organization
11
File Naming Conventions
12
Package Managers
13
Version Control with Git
14
Dynamic Document Generation with RMarkdown
15
Dependency Management with Make
16
Containerization with Docker
Genotype Imputation
Presenting Your Medical Research
On Being a Physician-Scientist
References
Bioinformatic Best Practices
8
Specific Drugs
9
Reproducible Data Analysis Workflow